Mercurial > repos > anton > vcffilter

comparison vcffilter.xml @ 3:6c2640e8ecbb draft default tip

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author anton
date Tue, 13 May 2014 16:23:56 -0400
parents 77e44d465705
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2:77e44d465705 3:6c2640e8ecbb
35 <output name="out_file1" file="vcffilter-test1.vcf"/> 35 <output name="out_file1" file="vcffilter-test1.vcf"/>
36 </test> 36 </test>
37 </tests> 37 </tests>
38 <help> 38 <help>
39 39
40 VCFfilter is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).
41
42 You can specify the following option the **Specify filtering expression** box in any combination:: 40 You can specify the following option the **Specify filtering expression** box in any combination::
43 41
44 -f, --info-filter specifies a filter to apply to the info fields of records, removes alleles which do not pass the filter 42 -f, --info-filter specifies a filter to apply to the info fields of records, removes alleles which do not pass the filter
45 -g, --genotype-filter specifies a filter to apply to the genotype fields of records 43 -g, --genotype-filter specifies a filter to apply to the genotype fields of records
46 -s, --filter-sites filter entire records, not just alleles 44 -s, --filter-sites filter entire records, not just alleles