# HG changeset patch
# User anton
# Date 1402416306 14400
# Node ID e756415c3a9f68124bd18a1145a39b815349b9aa
# Parent  911df9fc951289b4eed1b9da956eb8fb85c46a6d
Uploaded

diff -r 911df9fc9512 -r e756415c3a9f vcfannotate.xml
--- a/vcfannotate.xml	Fri May 09 11:57:29 2014 -0400
+++ b/vcfannotate.xml	Tue Jun 10 12:05:06 2014 -0400
@@ -4,10 +4,10 @@
 </requirements>
   <description>Intersect VCF records with BED annotations</description>
   <command>vcfannotate --key "${key_option}" -b "${bed_data}" "${input}" > "${out_file1}"</command>
-  <inputs>
+  <inputs>        
+    <param format="vcf" name="input" type="data" label="Select VCF dataset"/>
     <param name="bed_data" type="data" format="bed" label="BED datasets to itersect with"/>
     <param name="key_option" size="20" type="text" value="BED-features" label="Intersecting VCF records will be prefixed with this TAG within the INFO field" help="--key option"/>
-    <param format="vcf" name="input" type="data" label="From"/>
   </inputs>
   <outputs>
     <data format="vcf" name="out_file1" />
@@ -43,7 +43,7 @@
 
 ----
 
-Vcfannotate is a part of **VCFlib** toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).                                                                                                                                 
+Vcfannotate is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).                                                                                                                                 
 
 
 </help>