Mercurial > repos > anmoljh > feature_selection
changeset 5:24f2624e8a55 draft default tip
planemo upload commit 2797c26edc75e09465ee41fe44091a39d49b36ab-dirty
| author | anmoljh |
|---|---|
| date | Fri, 06 Apr 2018 08:46:01 -0400 |
| parents | e7561ef82bf1 |
| children | |
| files | feature_selection.xml |
| diffstat | 1 files changed, 16 insertions(+), 25 deletions(-) [+] |
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--- a/feature_selection.xml Fri Apr 06 06:15:56 2018 -0400 +++ b/feature_selection.xml Fri Apr 06 08:46:01 2018 -0400 @@ -12,52 +12,43 @@ <exit_code range="1:" /> </stdio> -<command interpreter="Rscript">feature_selection.R $input $profile $finalset $function1 $resampling $repeat $number $corcutoff $SAMPLING $cores> /dev/null 2>&1 </command> +<command interpreter="Rscript">feature_selection.R $input $profile $finalset $function1 $resampling $repeat $number $corcutoff $SAMPLING \${GALAXY_SLOTS:-1} >/dev/null 2>&1 </command> <inputs> -<param name="input" type="data" format="rdata" label="Select input data file" help="input .RData file" /> -<param name="SAMPLING" type="select" label="Select Sampling Method for imbalanced data" help="Defualt is with No sampling. you may choose downsample or upsample" > + <param name="input" type="data" format="rdata" label="Select input data file" help="input .RData file" /> + <param name="SAMPLING" type="select" label="Select Sampling Method for imbalanced data" help="Defualt is with No sampling. you may choose downsample or upsample" > <option value="garBage" selected="true">No Sampling</option> <option value="downsampling">downsample</option> <option value="upsampling">upsample</option> </param> -<param name="function1" type="select" display="radio" label="Select appropriate function for algorithm" > + <param name="function1" type="select" display="radio" label="Select appropriate function for algorithm" > <option value="rfFuncs" selected="true">random forest based function </option> <option value="lmFuncs">linear model based function</option> <option value="treebagFuncs">treebag(CART) based function</option> <option value="nbFuncs">neive bayes based function</option> -</param> + </param> -<param name="cores" type="select" label="Set Number of Cores " help="default is 1"> - <option value="1" selected="true">1</option> - <option value="4">4</option> - <option value="8">8</option> - <option value="10">10</option> - <option value="16">16</option> - </param> - - -<param name="corcutoff" type="float" value= "0.8" min="0.0" max = "1.0" label="Select correlation cutoff" help="values bewteen 0-1. fileds above cufoff value removed from data " /> -<param name="resampling" type="select" label="Select appropriate resampling method" > + <param name="corcutoff" type="float" value= "0.8" min="0.0" max = "1.0" label="Select correlation cutoff" help="values bewteen 0-1. fileds above cufoff value removed from data " /> + <param name="resampling" type="select" label="Select appropriate resampling method" > <option value="repeatedcv" selected="true">repeatedcv </option> <option value="boot">boot</option> <option value="cv">cv</option> <option value="boot632">boot632</option> -</param> - <param name="repeat" type="select" label="Set Number of times to repeat" help="default is 3 "> + </param> + + <param name="repeat" type="select" label="Set Number of times to repeat" help="default is 3 "> <option value="3" selected="true">3</option> - <option value="5">5</option> - <option value="7">7</option> - <option value="10">10</option> - </param> -<param name="number" type="select" label="Set Number of times Resample" help="default is 10"> + <option value="5">5</option> + <option value="7">7</option> + <option value="10">10</option> + </param> + <param name="number" type="select" label="Set Number of times Resample" help="default is 10"> <option value="10" selected="true">10</option> <option value="5">5</option> <option value="15">15</option> <option value="20">20</option> <option value="25">25</option> - </param> - + </param> </inputs> <outputs>