# HG changeset patch
# User anmoljh
# Date 1497273948 14400
# Node ID 6b9d382cb4a52f64825a50783c3fc41fd588f282
planemo upload commit e713bcfa1b1690f9a21ad0bd796c2d385f646e66-dirty
diff -r 000000000000 -r 6b9d382cb4a5 csv2rdata.R
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/csv2rdata.R Mon Jun 12 09:25:48 2017 -0400
@@ -0,0 +1,28 @@
+args <- commandArgs(TRUE)
+
+csv2rdatatrain <- function(arg1,arg2)
+{
+ file <- read.csv(arg1,row.names =1, header=T)
+ col <- ncol(file)
+ stopifnot(is.null(file) | col > 2 )
+
+ #cat("the Outcome column is not a factor vector.\n",file=stderr())
+ stopifnot(is.factor(file[,col]))
+
+ if(levels(file[,col])[1] != ""){
+ dataX <- file[,1:(col-1)]
+ dataY <- file[,col]
+ stopifnot(nrow(dataX) == length(dataY))
+ save(dataX,dataY,file=arg2)
+ }
+ else{
+ cat("the Outcome column has less number of entry than number of compounds.please check input file.\n",file=stderr())
+ }
+ }
+
+csv2rdatatrain(args[1],args[2])
+
+
+
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diff -r 000000000000 -r 6b9d382cb4a5 csv2rdata.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/csv2rdata.xml Mon Jun 12 09:25:48 2017 -0400
@@ -0,0 +1,51 @@
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+ This Tool Converts Input csv File into RData Which Is Further Used for Model Building
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+ R
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+ csv2rdata.R $file1 $RData
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+.. class:: infomark
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+**Input "csv file" format must be as given below :**
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+"",feature1,feaure2,feature3,..,activity
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+cpd1,623,0.4,3.4,..,Active
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+cpd2,234,0.9,5.6,..,Inactive
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+cpd3,567,0.5,3.14,..,Active
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+cpd4,231,0.1,1.2,..,Inactive
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+here "cpd" stands for name or id of a compound. It is rowname with no column header.
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diff -r 000000000000 -r 6b9d382cb4a5 tool_dependencies.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml Mon Jun 12 09:25:48 2017 -0400
@@ -0,0 +1,6 @@
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