Mercurial > repos > anmoljh > csv_to_rdata

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author anmoljh
date Wed, 18 Oct 2017 08:41:12 -0400
parents 85944f34e129
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1 <tool id="csv2rdata" name="Prepare input file" version="1.0">
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2 <description>
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3 This Tool Converts Input csv File into RData Which Is Further Used for Model Building
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4 </description>
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5
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6 <requirements>
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7 <requirement type="package" version="3.2.1">R</requirement>
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8 </requirements>
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9
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10 <stdio>
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11 <exit_code range="1:" />
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12 </stdio>
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13
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14 <command interpreter="Rscript">csv2rdata.R $file1 $RData </command>
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15
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16 <inputs>
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17 <param name="file1" type="data" format="csv" label="Select file containing training data" help="CSV format" />
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18 </inputs>
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19
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20 <outputs>
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21 <data name="RData" format="rdata" label="Input.rdata" />
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22 </outputs>
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23
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24 <tests>
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25 <test>
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26 <param name="file1" value="non_redundant.csv" />
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27 <output name="RData" file="desc.rdata" compare="sim_size" delta="50000" />
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28 </test>
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29 </tests>
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30
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31 <help>
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32 .. class:: infomark
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33
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34 **Input "csv file" format must be as given below :**
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37 "",feature1,feaure2,feature3,..,activity
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40 cpd1,623,0.4,3.4,..,Active
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42 cpd2,234,0.9,5.6,..,Inactive
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44 cpd3,567,0.5,3.14,..,Active
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46 cpd4,231,0.1,1.2,..,Inactive
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48 here "cpd" stands for name or id of a compound. It is rowname with no column header.
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49 </help>
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50
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51 </tool>