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changeset 0:c8f638151091 draft default tip

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author anmol
date Thu, 09 Jul 2015 06:42:08 -0400
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files trinitystats/tool_dependencies.xml trinitystats/trinityStats.xml
diffstat 2 files changed, 28 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/trinitystats/tool_dependencies.xml	Thu Jul 09 06:42:08 2015 -0400
@@ -0,0 +1,6 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="trinityrnaseq" version="2013_08_14">
+        <repository changeset_revision="9be1cbdae115" name="package_trinityrnaseq_2013_08_14" owner="jjohnson" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/trinitystats/trinityStats.xml	Thu Jul 09 06:42:08 2015 -0400
@@ -0,0 +1,22 @@
+<tool id='id_trinity_stats' name='Trinity Stats' version='1.0'>
+    <description></description>
+
+    <requirements>
+        <requirement type="package" version="2013_08_14">trinityrnaseq</requirement>
+    </requirements>
+
+    <command interpreter='perl'>TrinityStats.pl  $fastafile  &gt; $statsfile 2&gt;&amp;1;</command>
+
+    <inputs>
+	    <!-- Required -->
+
+	    <param name='fastafile'  type="data" format="fasta"  label='fastafile' help='Assembled fasta file'/>
+  
+	     <!-- Optional -->
+
+    </inputs>
+
+    <outputs>
+        <data name='statsfile' format='tabular' label="${tool.name} on ${on_string}: "/>
+    </outputs>
+</tool>