view seqtk_seq.xml @ 2:2d6ec576b9a4 draft default tip

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<tool id="seqtk_seq" name="Convert to FASTA (seqtk)" version="0.1.0">
    <requirements>
        <requirement type="package" version="1.0-r68">seqtk</requirement>
    </requirements>
    <stdio>
        <exit_code range="1:" />
    </stdio>

    <command><![CDATA[
        seqtk seq -a "$input1" > "$output1"
    ]]></command>
    <inputs>
        <param type="data" name="input1" format="fastq" />
    </inputs>
    <outputs>
        <data name="output1" format="fasta" from_work_dir="2.fasta" />
    </outputs>
    <tests>
        <test>
            <param name="input1" value="2.fastq"/>
            <output name="output1" file="2.fasta"/>
        </test>
    </tests>
    <help><![CDATA[
	    /bin/sh: seqtk seq -a <input> > <output>;

    ]]></help>
</tool>