Mercurial > repos > anmol > package_trimmomatic_0_33

changeset 0:dd82d0650140 draft

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Uploaded
author anmol
date Tue, 22 Sep 2015 10:32:07 -0400
parents
children 7837bd802596
files tool_dependencies.xml
diffstat 1 files changed, 25 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Sep 22 10:32:07 2015 -0400
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="trimmomatic" version="0.32">
+   <install version="1.0">
+     <actions>
+       <action type="download_by_url">http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.32.zip</action>
+       <action type="move_file">
+          <source>trimmomatic-0.32.jar</source>
+          <destination>$INSTALL_DIR</destination>
+       </action>
+       <action type="move_directory_files">
+          <source_directory>adapters</source_directory>
+          <destination_directory>$INSTALL_DIR/adapters</destination_directory>
+       </action>
+       <action type="set_environment">
+          <environment_variable name="TRIMMOMATIC_DIR" action="set_to">$INSTALL_DIR</environment_variable>
+       </action>
+       <action type="set_environment">
+          <environment_variable name="TRIMMOMATIC_ADAPTERS_DIR" action="set_to">$INSTALL_DIR/adapters</environment_variable>
+       </action>
+     </actions>
+    </install>
+   <readme>Trimmomatic requires the Java Runtime Environment</readme>
+  </package>
+</tool_dependency>