comparison cut_trajectory.py @ 9:e5cf7698a2af draft

"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/aubi_piaf commit 434f3e872798e786f0c6a88939455692f711496c"

8:d45cecb7cfd0

        logging_file = (log_directory
                        + logging_file.rsplit("/", 1)[1].split(".")[0]
                        + "_" + str(k) + ".log")
        try:
            os.makedirs(log_directory, exist_ok=True)
        except OSError as error:
            print("Directory '%s' can not be created")
        f_log = open(logging_file, "w")
        subprocess.run(bash_command, shell=True, stdout=f_log, stderr=f_log)
        f_log.close()
        return logging_file

    nb_cpus = args.number_cpus
    launch_cut_traj(
        list_nbr_sub_traj, gro, xtc, out_directory, log_file,
        args.group_output, nb_cpus
    )

9:e5cf7698a2af

        logging_file = (log_directory
                        + logging_file.rsplit("/", 1)[1].split(".")[0]
                        + "_" + str(k) + ".log")
        try:
            os.makedirs(log_directory, exist_ok=True)
        except OSError:
            print("Directory '%s' can not be created")
        f_log = open(logging_file, "w")
        subprocess.run(bash_command, shell=True, stdout=f_log, stderr=f_log)
        f_log.close()
        return logging_file

    nb_cpus = args.number_cpus
    launch_cut_traj(
        list_nbr_sub_traj, gro, xtc, out_directory, log_file,
        args.group_output, nb_cpus
    )