Mercurial > repos > abims-sbr > pogs
changeset 12:752786fe211b draft default tip
planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1
| author | lecorguille |
|---|---|
| date | Mon, 24 Sep 2018 03:57:14 -0400 |
| parents | 05985273b735 |
| children | |
| files | POGs.xml macros.xml |
| diffstat | 2 files changed, 9 insertions(+), 11 deletions(-) [+] |
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--- a/POGs.xml Tue Jul 03 10:53:02 2018 -0400 +++ b/POGs.xml Mon Sep 24 03:57:14 2018 -0400 @@ -114,8 +114,6 @@ <![CDATA[ -**Last Version** : Victor Mataigne and Gildas Le Corguillé - **Description** This tool parses homologous sequences obtained by pairwise and gather sequences into groups of orthologous sequences. @@ -130,14 +128,13 @@ **Parameters** -- Species minimum : drop orthogroups with less than n species : orthogroups with less than n species within won't be recorded. - -- verbose : check 'Yes' if you want a supplementary table : countings of orthogroups before the paralogous sequences removal. - -- paralogs : check 'Yes' if you also want to retrieve the orthogroups before the paralogous sequences removal. + - Species minimum : drop orthogroups with less than n species : orthogroups with less than n species within won't be recorded. + - verbose : check 'Yes' if you want a supplementary table : countings of orthogroups before the paralogous sequences removal. + - paralogs : check 'Yes' if you also want to retrieve the orthogroups before the paralogous sequences removal. .. class:: warningmark + The minimum number of species per group only applies to the main output files. In the case of the 'paralogs' option, this parameter is more likely the minimum amount of sequences to keep. -------- @@ -158,6 +155,8 @@ .. image:: adaptsearch_picture_helps.png +--------- + Changelog --------- @@ -184,6 +183,4 @@ </help> - <expand macro="citations" /> - </tool>
--- a/macros.xml Tue Jul 03 10:53:02 2018 -0400 +++ b/macros.xml Mon Sep 24 03:57:14 2018 -0400 @@ -7,13 +7,14 @@ <token name="@HELP_AUTHORS@"> .. class:: infomark -**Authors** Eric Fontanillas creates the scripts of this pipeline. +**Authors** Eric Fontanillas created the version 1 of this pipeline. Victor Mataigne developped version 2. .. class:: infomark -**Galaxy integration** ABiMS TEAM +**Galaxy integration** Julie Baffard and ABiMS TEAM, Roscoff Marine Station | Contact support.abims@sb-roscoff.fr for any questions or concerns about the Galaxy implementation of this tool. + | Credits : Gildas le Corguillé, Misharl Monsoor ---------------------------------------------------