view test-data/pogs.output @ 7:04422117fcd7 draft

planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 76e603ecd0118c8060d972b675a13db858956eb6

*** pogs.py ***

Building of orthogroups based on pairs of genes obtained by pairwise comparisons between pairs of species.
Genes are gathered in orthogroups based on the principle of transitivity between genes pairs.

Parsing input files ...
Creating Orthogroups ...

    Summary before paralogous filtering : 

         2 sps  3 sps  4 sps
2 seqs    1394      0      0
3 seqs       0    163      0
4 seqs       0     26     33
5 seqs       0      3     17
6 seqs       0      0     17
7 seqs       0      0      7
8 seqs       0      0      2
11 seqs      0      0      1
13 seqs      0      0      1 

Writing orthogroups with paralogs files ...

Filtering paralogous sequences and writing final orthogroups files ...
    (Dropping Orthogroups with less than 3 species)

    Summary after paralogous filtering : 

        3 sps  4 sps
3 seqs    192      0
4 seqs      0     78

270 orthogroups have been infered from 6 pairwise comparisons by RBH