Mercurial > repos > abims-sbr > pogs

diff POGs.xml @ 4:b7bd93fc0ac9 draft

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planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 8a27e74e95c5639292ca09c7e1680acd1088dcdd-dirty
author abims-sbr
date Mon, 29 May 2017 07:45:07 -0400
parents be2128ad0030
children dad7053ba20e
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line diff
--- a/POGs.xml	Mon May 29 04:09:04 2017 -0400
+++ b/POGs.xml	Mon May 29 07:45:07 2017 -0400
@@ -26,7 +26,7 @@
 		<param name="zip" type="data" format="no_unzip.zip,zip" label="Choose your ZIP file" help="Contains the files filter after the tool oase" />
 		<param name="zip_file" type="data" format="no_unzip.zip,zip" label="Choose your ZIP file " help="Contains homologous sequences in PROTEIC format, ONLY A ZIP FILE" />
 		<param name="minseq" type="integer" value="3" label="Drop orthogroups with less than n species" />
-		<param name="paralogs" type="select" label="Paralogs filtering" help="Yes : paralogs sequences will be (naively) filtered to keep only one sequence. No : the whole orthogroup will be removed." >
+		<param name="paralogs" type="select" label="Paralogs savage removal" help="Yes : orthogroups with paralogs will be fully removed. No : paralogs sequences will be (naively) filtered to keep only one sequence." >
 			<option value="yes">Yes</option>
 			<option value="no">No</option>
 		</param>
@@ -39,15 +39,15 @@
 
 	<tests>
 		<test>
-			<param name="zip" ftype="zip" value="filter_oase_results_for_pogs.zip" />
-			<param name="zip_file" ftype="zip" value="test_03_output_Pairwise_PROT_inputPOGS.zip" />
+			<param name="zip" ftype="zip" value="outputfilter.zip" />
+			<param name="zip_file" ftype="zip" value="outputpairwise.zip" />
 			<param name="minseq" value="2" />
 			<param name="paralogs" value="no" />
 			<output name="output" value="test_03.out" />
 		</test>
 		<test>
-			<param name="zip" ftype="zip" value="filter_oase_results_for_pogs.zip" />
-			<param name="zip_file" ftype="zip" value="test_03_output_Pairwise_PROT_inputPOGS.zip" />
+			<param name="zip" ftype="zip" value="outputfilter.zip" />
+			<param name="zip_file" ftype="zip" value="outputpairwise.zip" />
 			<param name="minseq" value="2" />
 			<param name="paralogs" value="yes" />
 			<output name="output" value="test_03b.out" />