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comparison POGs.xml @ 9:a76e4758dc44 draft

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planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 7c9540507076087e858141f9dd5df33409690dac
author abims-sbr
date Wed, 28 Feb 2018 06:04:15 -0500
parents 3fbf4e4d111e
children 05985273b735
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8:3fbf4e4d111e 9:a76e4758dc44
1 <tool name="POGs" id="POGs" version="2.0"> 1 <tool name="POGs" id="POGs" version="2.0.1">
2 2
3 <description> 3 <description>
4 Find orthologous groups 4 Find orthologous groups
5 </description> 5 </description>
6 6
134 134
135 - verbose : check 'Yes' if you want a supplementary table : countings of orthogroups before the paralogous sequences removal. 135 - verbose : check 'Yes' if you want a supplementary table : countings of orthogroups before the paralogous sequences removal.
136 136
137 - paralogs : check 'Yes' if you also want to retrieve the orthogroups before the paralogous sequences removal. 137 - paralogs : check 'Yes' if you also want to retrieve the orthogroups before the paralogous sequences removal.
138 138
139 :: .. class:: warningmark 139 .. class:: warningmark
140 The minimum number of species per group only applies to the main output files. In the case of the 'paralogs' option, this parameter is more likely the minimum amount of sequences to keep. 140 The minimum number of species per group only applies to the main output files. In the case of the 'paralogs' option, this parameter is more likely the minimum amount of sequences to keep.
141 141
142 -------- 142 --------
143 143
144 **Outputs** 144 **Outputs**
153 153
154 --------- 154 ---------
155 155
156 **The AdaptSearch Pipeline** 156 **The AdaptSearch Pipeline**
157 157
158 .. image:: adaptsearch_picture_helps.png :heigth: 593 :width: 852 158 .. image:: adaptsearch_picture_helps.png
159 159
160 Changelog 160 Changelog
161 --------- 161 ---------
162 162
163 **Version 2.1 - 04/01/2018** 163 **Version 2.1 - 04/01/2018**