Mercurial > repos > abims-sbr > pairwise
changeset 11:ae65822c1fb7 draft default tip
planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1
| author | lecorguille |
|---|---|
| date | Mon, 24 Sep 2018 03:56:40 -0400 |
| parents | cb5f2cc3dedc |
| children | |
| files | macros.xml pairwise.xml |
| diffstat | 2 files changed, 16 insertions(+), 7 deletions(-) [+] |
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--- a/macros.xml Fri Jul 06 02:51:09 2018 -0400 +++ b/macros.xml Mon Sep 24 03:56:40 2018 -0400 @@ -7,13 +7,14 @@ <token name="@HELP_AUTHORS@"> .. class:: infomark -**Authors** Eric Fontanillas creates the scripts of this pipeline. +**Authors** Eric Fontanillas created the version 1 of this pipeline. Victor Mataigne developped version 2. .. class:: infomark -**Galaxy integration** ABiMS TEAM +**Galaxy integration** Julie Baffard and ABiMS TEAM, Roscoff Marine Station | Contact support.abims@sb-roscoff.fr for any questions or concerns about the Galaxy implementation of this tool. + | Credits : Gildas le Corguillé, Misharl Monsoor ---------------------------------------------------
--- a/pairwise.xml Fri Jul 06 02:51:09 2018 -0400 +++ b/pairwise.xml Mon Sep 24 03:56:40 2018 -0400 @@ -197,9 +197,19 @@ - 'Pairwise' : the general output. It gives the information about what the tool has done for each pairwise. - - 'Pairwise_DNA' : the output which contains nucleic sequences (of the pairwise) that are homologous. The sequences are with nucleotides. It shows for both the query and match : - the name - the sequence in nucleotides + - 'Pairwise_DNA' : the output which contains nucleic sequences (of the pairwise) that are homologous. The sequences are in nucleic format. There are one file per couple of species, and homologous pairs are written by sets of 4 lines : + +Exemple for two homologous pairs for the output file for species X/Y : + +| >Gene_A_species_X_homologous_to_Gene_B_species_Y +| Nucleic_sequence_from_filter_assemblies +| >Gene_B_species_Y_homologous_to_Gene_A_species_X +| Nucleic_sequence_from_filter_assemblies +| >Gene_C_species_X_homologous_to_Gene_D_species_Y +| Nucleic_sequence_from_filter_assemblies +| >Gene_D_species_Y_homologous_to_Gene_C_species_X +| Nucleic_sequence_from_filter_assemblies + -------- @@ -230,6 +240,4 @@ ]]> </help> - <expand macro="citations" /> - </tool>