diff test-data/pairwise.out @ 3:5f68b2fc02c1 draft

planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 44a89d5eeb82789bfc643b33c11f391281b6374b

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/pairwise.out	Wed Sep 27 10:01:55 2017 -0400
@@ -0,0 +1,120 @@
+Pair of species:
+('PfPfiji_Trinity.fasta', 'ApApomp_Trinity.fasta')
+Pair of species:
+('PfPfiji_Trinity.fasta', 'AmAmphi_Trinity.fasta')
+Pair of species:
+('PfPfiji_Trinity.fasta', 'AcAcaud_Trinity.fasta')
+Pair of species:
+('ApApomp_Trinity.fasta', 'AmAmphi_Trinity.fasta')
+Pair of species:
+('ApApomp_Trinity.fasta', 'AcAcaud_Trinity.fasta')
+Pair of species:
+('AmAmphi_Trinity.fasta', 'AcAcaud_Trinity.fasta')
+-------------------- Pairwise PfPfiji_AmAmphi --------------------
+
+database : PfPfiji_Trinity.fasta
+query file : AmAmphi_Trinity.fasta
+
+***** RUN FIRST BLAST *****
+
+
+database : AmAmphi_Trinity.fasta
+query file : only the sequences of PfPfiji_Trinity.fasta which matched during the last BLAST
+
+***** RUN SECOND BLAST *****
+
+
+Number of pairwises parsed = 2 
+
+
+
+-------------------- Pairwise AmAmphi_AcAcaud --------------------
+
+database : AmAmphi_Trinity.fasta
+query file : AcAcaud_Trinity.fasta
+
+***** RUN FIRST BLAST *****
+
+
+database : AcAcaud_Trinity.fasta
+query file : only the sequences of AmAmphi_Trinity.fasta which matched during the last BLAST
+
+***** RUN SECOND BLAST *****
+
+
+Number of pairwises parsed = 3 
+
+
+
+-------------------- Pairwise ApApomp_AmAmphi --------------------
+
+database : ApApomp_Trinity.fasta
+query file : AmAmphi_Trinity.fasta
+
+***** RUN FIRST BLAST *****
+
+
+database : AmAmphi_Trinity.fasta
+query file : only the sequences of ApApomp_Trinity.fasta which matched during the last BLAST
+
+***** RUN SECOND BLAST *****
+
+
+Number of pairwises parsed = 0 
+
+
+
+-------------------- Pairwise PfPfiji_ApApomp --------------------
+
+database : PfPfiji_Trinity.fasta
+query file : ApApomp_Trinity.fasta
+
+***** RUN FIRST BLAST *****
+
+
+database : ApApomp_Trinity.fasta
+query file : only the sequences of PfPfiji_Trinity.fasta which matched during the last BLAST
+
+***** RUN SECOND BLAST *****
+
+
+Number of pairwises parsed = 5 
+
+
+
+-------------------- Pairwise PfPfiji_AcAcaud --------------------
+
+database : PfPfiji_Trinity.fasta
+query file : AcAcaud_Trinity.fasta
+
+***** RUN FIRST BLAST *****
+
+
+database : AcAcaud_Trinity.fasta
+query file : only the sequences of PfPfiji_Trinity.fasta which matched during the last BLAST
+
+***** RUN SECOND BLAST *****
+
+
+Number of pairwises parsed = 2 
+
+
+
+-------------------- Pairwise ApApomp_AcAcaud --------------------
+
+database : ApApomp_Trinity.fasta
+query file : AcAcaud_Trinity.fasta
+
+***** RUN FIRST BLAST *****
+
+
+database : AcAcaud_Trinity.fasta
+query file : only the sequences of ApApomp_Trinity.fasta which matched during the last BLAST
+
+***** RUN SECOND BLAST *****
+
+
+Number of pairwises parsed = 1 
+
+
+