comparison orthogroups_tool.xml @ 8:1b2c5ce47646 draft default tip

planemo upload for repository htpps://github.com/abims-sbr/adaptearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1

7:040fac59e39c

<tool name="Orthogroups_Tool" id="orthogroups_tool" version="1.0.2">

    <description>
        This tool takes Orthogroups found by OrthoFinder and proceeds to retrieve nucleic sequences back, then write each orthogroups in its own fasta file.
    </description>

    <macros>
        <import>macros.xml</import>
    </macros>

@HELP_AUTHORS@

<![CDATA[

The script of this tool has been written by Victor Mataigne.

-------------------------------------------

**Description**

This tool takes Orthogroups found by OrthoFinder and proceeds to retrieve nucleic sequences back, then write each orthogroups in its own fasta file.

-------------------------------------------

]]>
    </help>

    <citations>
        <citation type="bibtex">Credits : ABIMS team, Roscoff Marine Station</citation>
        <citation type="bibtex">Contact [e-mail] for any questions or concerns about the Galaxy implementation of this tool.</citation>
        <citation type="bibtex">Author : Victor Mataigne -- Galaxy integration : Gildas Le Corguillé and Victor Mataigne.
        </citation>
        <citation type="bibtex">Emms, D.M. and Kelly, S. (2015) OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy, Genome Biology 16:157.
        </citation>
    </citations>

</tool>

8:1b2c5ce47646

<tool name="Orthogroups_Tool" id="orthogroups_tool" version="1.0.2">

    <description>
        Writes orthogroups found by OrthoFinder in fasta files (with their sequences).
    </description>

    <macros>
        <import>macros.xml</import>
    </macros>

@HELP_AUTHORS@

<![CDATA[

**Description**

This tool takes Orthogroups found by OrthoFinder and proceeds to retrieve nucleic sequences back, then write each orthogroups in its own fasta file.

-------------------------------------------

]]>
    </help>

    <citations>
        <citation type="doi">10.1186/s13059-015-0721-2</citation>
    </citations>

</tool>