Mercurial > repos > abims-sbr > mutcount

diff MutCount.xml @ 7:f1e24200e5ae draft

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planemo upload for repository htpps://github.com/abims-sbr/adaptearch commit b7a3030ea134b5dfad89b1a869db659d72d1145c
author abims-sbr
date Wed, 28 Feb 2018 10:39:41 -0500
parents fe74cf0d4e7a
children 705a7bf4c311
line wrap: on
line diff
--- a/MutCount.xml	Wed Feb 28 06:06:14 2018 -0500
+++ b/MutCount.xml	Wed Feb 28 10:39:41 2018 -0500
@@ -154,7 +154,8 @@
         
     </outputs>
 
-    <tests>        
+    <tests>
+   
         <test>
             <conditional name="method" >
                 <param name="method_run" value="concat" />
@@ -202,7 +203,7 @@
                 </assert_contents>
             </output>
         </test>
-
+        
         <test>
             <conditional name="method" >
                 <param name="method_run" value="separated" />
@@ -212,17 +213,17 @@
             </conditional>            
             <output name="ivywrel">
                 <assert_contents>
-                    <has_line line="locus2_sp6_sp6.fasta,21.00000,0.32812,23.00000,0.35938,NA,NA,23.00000,0.35938,NA,NA,22.00000,0.34375,23.00000,0.35938,NA,NA,NA,NA,22.00000,0.34375" />
+                    <has_line line="locus1_sp8_sp8.fasta,25.00000,0.36765,28.00000,0.36364,NA,NA,NA,NA,27.00000,0.35065,27.00000,0.35065,28.00000,0.36364,0.00000,0.00000,27.00000,0.40909,27.00000,0.35065" />
                 </assert_contents>
             </output>
             <output name="rhkde">
                 <assert_contents>
-                    <has_line line="locus1_sp8_sp8.fasta,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,14.00000,0.18182,4.00000,0.05195,10.00000,0.12987,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,16.00000,0.20779,5.00000,0.06494,11.00000,0.14286,15.00000,0.19481,4.00000,0.05195,11.00000,0.14286,14.00000,0.18182,2.00000,0.02597,12.00000,0.15584,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,13.00000,0.19697,2.00000,0.03030,11.00000,0.16667,15.00000,0.19481,4.00000,0.05195,11.00000,0.14286"/>
+                    <has_line line="locus1_sp6_sp6.fasta,28.00000,0.35897,14.00000,0.17949,14.00000,0.17949,30.00000,0.38462,16.00000,0.20513,14.00000,0.17949,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,30.00000,0.38462,16.00000,0.20513,14.00000,0.17949,30.00000,0.38462,16.00000,0.20513,14.00000,0.17949,30.00000,0.38462,16.00000,0.20513,14.00000,0.17949,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,30.00000,0.38462,16.00000,0.20513,14.00000,0.17949"/>
                 </assert_contents>
             </output>
             <output name="payre_mvgds">
                 <assert_contents>
-                    <has_line line="locus2_sp6_sp6.fasta,18.00000,0.28125,6.00000,0.09375,20.00000,0.31250,0.90000,0.30000,18.00000,0.28125,6.00000,0.09375,21.00000,0.32812,0.85714,0.28571,NA,NA,NA,NA,NA,NA,NA,NA,18.00000,0.28125,6.00000,0.09375,20.00000,0.31250,0.90000,0.30000,NA,NA,NA,NA,NA,NA,NA,NA,17.00000,0.26562,6.00000,0.09375,20.00000,0.31250,0.85000,0.30000,20.00000,0.31250,8.00000,0.12500,19.00000,0.29688,1.05263,0.42105,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,17.00000,0.26562,6.00000,0.09375,20.00000,0.31250,0.85000,0.30000"/>
+                    <has_line line="locus1_sp8_sp8.fasta,16.00000,0.23529,3.00000,0.04412,27.00000,0.39706,0.59259,0.11111,18.00000,0.23377,4.00000,0.05195,29.00000,0.37662,0.62069,0.13793,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,19.00000,0.24675,6.00000,0.07792,30.00000,0.38961,0.63333,0.20000,20.00000,0.25974,7.00000,0.09091,32.00000,0.41558,0.62500,0.21875,20.00000,0.25974,5.00000,0.06494,29.00000,0.37662,0.68966,0.17241,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,14.00000,0.21212,2.00000,0.03030,26.00000,0.39394,0.53846,0.07692,19.00000,0.24675,6.00000,0.07792,32.00000,0.41558,0.59375,0.18750"/>
                 </assert_contents>
             </output>
             <output name="avlimfyw">