# HG changeset patch
# User abims-sbr
# Date 1757579226 0
# Node ID a01189958ae4b9bf95bc9789864adcc2975d06d8
# Parent  79f75b3faca5d9bbb9fc845d35aad53a7aea9792
planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ee0948efcef5f8732f7f32ce37a8127d891d0c64

diff -r 79f75b3faca5 -r a01189958ae4 filter_assembly.xml
--- a/filter_assembly.xml	Mon Jun 30 12:22:44 2025 +0000
+++ b/filter_assembly.xml	Thu Sep 11 08:27:06 2025 +0000
@@ -1,4 +1,4 @@
-<tool name="Filter assemblies" id="filter_assemblies" version="2.0.5">
+<tool name="Filter assemblies" id="filter_assemblies" version="2.0.6">
 
     <description>
         Filter the outputs of Spades, Velvet or Trinity assemblies
diff -r 79f75b3faca5 -r a01189958ae4 scripts/S01_script_to_choose.py
--- a/scripts/S01_script_to_choose.py	Mon Jun 30 12:22:44 2025 +0000
+++ b/scripts/S01_script_to_choose.py	Thu Sep 11 08:27:06 2025 +0000
@@ -5,6 +5,7 @@
 
 from Bio import SeqIO
 
+
 def fasta_formatter(input_file, output_file):
     """
     Reformats the input FASTA file to ensure that sequences
@@ -26,6 +27,7 @@
         if sequence:
             outfile.write(sequence + '\n')
 
+
 def reformat_headers(input_file, output_file, prefix):
     """
     Reformats the headers of the FASTA records by adding a specified prefix
@@ -76,6 +78,7 @@
     # Write output file with new headers
     SeqIO.write(modified_sequences, output_fasta, "fasta")
 
+
 def main():
     if len(sys.argv) < 5:
         print(
@@ -156,5 +159,6 @@
         os.remove(cap_contigs_file)
         os.remove(name_fasta_final)
 
+
 if __name__ == "__main__":
     main()