comparison scripts/dico.py @ 7:35e39b4128ba draft

planemo upload for repository https://github.com/abims-sbr/adaptsearch commit b7a3030ea134b5dfad89b1a869db659d72d1145c

6:c03ba6a7c5f2

import string

def dico(F1):    
    dicoco = {}
    while 1:
        next2 = F1.readline()
        if not next2:
            break
        if next2[0] == ">":
            fasta_name_query = next2[:-1]
            Sn = string.split(fasta_name_query, "||")
            fasta_name_query = Sn[0]
            next3 = F1.readline()
            fasta_seq_query = next3[:-1]
            dicoco[fasta_name_query]=fasta_seq_query    
    return(dicoco)

7:35e39b4128ba

import string, itertools

def dico(F1):
    dicoco = {}
    with open(F1, "r") as file:
        for name, query in itertools.izip_longest(*[file]*2):
            if name[0] == ">":
                fasta_name_query = name[:-1]
                Sn = string.split(fasta_name_query, "||")
                fasta_name_query = Sn[0]                
                fasta_seq_query = query[:-1]
                dicoco[fasta_name_query] = fasta_seq_query    
    return(dicoco)