# HG changeset patch # User abims-sbr # Date 1516284144 18000 # Node ID e0bea88bb09fc4680175cdb21a82a8d421925531 # Parent 0d2da4c020dce4de0c0daadb9e215489d2babcc3 planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 76e603ecd0118c8060d972b675a13db858956eb6 diff -r 0d2da4c020dc -r e0bea88bb09f BlastAlign.xml --- a/BlastAlign.xml Thu Jan 18 08:13:26 2018 -0500 +++ b/BlastAlign.xml Thu Jan 18 09:02:24 2018 -0500 @@ -1,4 +1,4 @@ - + Align the nucleic acid sequences using BLASTN @@ -55,10 +55,9 @@ - - - - + @@ -105,6 +104,22 @@ + + +
+ + + + + +
+ + + + +
+ + diff -r 0d2da4c020dc -r e0bea88bb09f scripts/S01_phylip2fasta.py --- a/scripts/S01_phylip2fasta.py Thu Jan 18 08:13:26 2018 -0500 +++ b/scripts/S01_phylip2fasta.py Thu Jan 18 09:02:24 2018 -0500 @@ -13,14 +13,12 @@ """ ## INPUT -""" if os.path.isfile(sys.argv[1]) : f1 = sys.argv[1] else: print "No existing phylip file ; exiting ..." exit() -""" -f1 = sys.argv[1] + F1 = open("%s" %f1, 'r') ## OUTPUT @@ -52,7 +50,10 @@ ################### F1.readline() ## jump the first line + fichier_txt, c = format(F1) ### DEF1 ### + F2.write(fichier_txt) + F1.close() F2.close()