diff scripts/S01_phylip2fasta.py @ 5:0d2da4c020dc draft

planemo upload for repository https://github.com/abims-sbr/adaptsearch commit df6ba874c5e5f0cde12c9253b5c192e4a35f2280

--- a/scripts/S01_phylip2fasta.py	Wed Jan 17 11:32:39 2018 -0500
+++ b/scripts/S01_phylip2fasta.py	Thu Jan 18 08:13:26 2018 -0500
@@ -13,12 +13,14 @@
 """
 
 ## INPUT
+"""
 if os.path.isfile(sys.argv[1]) :
     f1 = sys.argv[1]
 else:
     print "No existing phylip file ; exiting ..."
     exit()
-
+"""
+f1 = sys.argv[1]
 F1 = open("%s" %f1, 'r')
 
 ## OUTPUT
@@ -50,10 +52,7 @@
 ###################
 
 F1.readline() ## jump the first line
-
 fichier_txt, c = format(F1)   ### DEF1 ###
-
 F2.write(fichier_txt)
-
 F1.close()
 F2.close()