| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| testtoolshed.g2.bx.psu.edu/repos/fubar/differential_count_models/rgdifferentialcount/0.28 (this tool) |
| testtoolshed.g2.bx.psu.edu/repos/fubar/differential_count_models/rgdifferentialcount/0.27 |
| rgdifferentialcount |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| R | 3.1.2 | package |
| graphicsmagick | 1.3.18 | package |
| ghostscript | 9.10 | package |
| biocbasics | 2.14 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
doVoom: T Treat_cols: ['2', '6', '7', '8'] input1: test_bams2mx.xls edgeR|doedgeR: T title: edgeRtest edgeR|edgeR_priordf: 8 useNDF: fdrthresh: 0.05 subjectids: Control_cols: ['3', '4', '5', '9'] treatment_name: liver DESeq2|doDESeq2: T control_name: heart fdrtype: fdr |
out_edgeR: edgeRtest1out.xls html_file: edgeRtest1out.html |
test_bams2mx.xls edgeRtest1out.xls edgeRtest1out.html |