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Repository seq_rename
Name: seq_rename
Owner: peterjc
Synopsis: Rename sequences with ID mapping from a tabular file
Allows you to rename sequences in FASTA, QUAL, FASTQ or SFF files.

The renaming rules are given by two columns of a tabular file (old names and new
names). Any sequence not mentioned in the tabular file keeps its current name.

This tool requires Biopython for working with SFF files.

See also my related tools to filter sequences by ID, or select sequences by ID.
Content homepage: https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_rename
Development repository: https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_rename
Link to this repository revision: https://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_rename/16a1a5ae98e9
Clone this repository: hg clone https://testtoolshed.g2.bx.psu.edu/repos/peterjc/seq_rename
Type: unrestricted
Revision: 3:16a1a5ae98e9
This revision can be installed: True
Times cloned / installed: 745

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
with ID mapping from a tabular file 0.0.3 any

Categories
Fasta Manipulation - Tools for manipulating fasta data
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Text Manipulation - Tools for manipulating data