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Repository effectivet3

Name: effectivet3

Owner: peterjc

Synopsis: Find bacterial type III effectors in protein sequences

Detailed description:

Wrapper for the command line Java tool EffectiveT3, v1.0.1, which
converts the output into a tab separated table for use in Galaxy.

Jehl, Arnold and Rattei. Effective - a database of predicted secreted
bacterial proteins. Nucleic Acids Research, 39(Database issue), D591-5, 2011.
http://dx.doi.org/10.1093/nar/gkq1154

Arnold, Brandmaier, Kleine, Tischler, Heinz, Behrens, Niinikoski,
Mewes, Horn and Rattei. Sequence-based prediction of type III
secreted proteins. PLoS Pathog. 5(4):e1000376, 2009.
http://dx.doi.org/10.1371/journal.ppat.1000376

See http://effectors.org/

Content homepage: http://effectors.org

Development repository: https://github.com/peterjc/pico_galaxy/tree/master/tools/effectiveT3

Link to this repository revision: https://testtoolshed.g2.bx.psu.edu/view/peterjc/effectivet3/c70df461aae5

Clone this repository: hg clone https://testtoolshed.g2.bx.psu.edu/repos/peterjc/effectivet3

Type: unrestricted

Revision: 7:c70df461aae5

This revision can be installed: False

Times cloned / installed: 726