| edgeR, DESeq2 and voom for replicate RNA seq data.
1) TURN OFF HTML SANITIZATION in universe_wsgi.xml or your outputs will lack proper style sheets and look awful 2) This packages dependencies include R and bioconductor so expect your proxy to time out during the installation - be patient - it takes 10 to 30 minutes to download and compile everything, depending on the velocity of your machine and the interwebs - about 20 minutes on my laptop. 3) make sure you have a $TMP set in your environment or ghostscript gets unhappy - you'll see a warning every time you run this tool if you've forgotten. |
hg clone https://testtoolshed.g2.bx.psu.edu/repos/fubar/differential_count_models
| Name | Version | Type | |
|---|---|---|---|
| R | 3.1.2 | package | |
| biocbasics | 2.14 | package | |
| ghostscript | 9.10 | package | |
| graphicsmagick | 1.3.18 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| models using BioConductor packages | 0.28 | any | |