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Repository revision
11 (2011-12-27)
9 (2011-12-07)
0 (2011-11-19)
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.
Repository
bedtools
Name:
bedtools
Owner:
aaronquinlan
Synopsis:
bedtools genome arithmetic suite
Link to this repository:
https://testtoolshed.g2.bx.psu.edu/view/aaronquinlan/bedtools/0ee50862dd67
Clone this repository:
hg clone
https://testtoolshed.g2.bx.psu.edu/repos/aaronquinlan/bedtools
Type:
unrestricted
Revision:
11:0ee50862dd67
This revision can be installed:
True
Times cloned / installed:
478
Contents of this repository
Valid tools
- click the name to preview the tool and use the pop-up menu to inspect all metadata
Name
Description
Version
Minimum Galaxy Version
Find BAM alignments that overlap intervals in another file
View tool metadata
0.1.0
any
Identify common intervals among multiple BED files.
View tool metadata
0.1.0
any
Create a histogram of genome coverage
View tool metadata
0.1.0
any
Create a BedGraph of genome coverage
View tool metadata
0.1.0
any
Count intervals in one file overlapping intervals in another file.
View tool metadata
0.1.0
any
Convert from BAM to BED.
View tool metadata
0.1.0
any
Merge multiple BedGraph files
View tool metadata
0.1.0
any
Categories
Sequence Analysis
- Tools for performing Protein and DNA/RNA analysis