# get R http://cran.r-project.org/src/base/R-3/R-3.0.3.tar.gz # installs Bioconductor source("http://bioconductor.org/biocLite.R") biocLite() # upgrage? Some packages are "old" and can be upgraded with: biocLite("BiocUpgrade") # install metaMS and multtest for differential analysis tool (from xcms) biocLite("metaMS") biocLite("multtest") # for "multi-threading" (actually starts multiple R processes for parallel processing): install.packages("snow", repos="http://cran.rstudio.com/")