Mercurial > repos > peterjc > tmhmm_and_signalp
comparison tools/protein_analysis/psortb.py @ 11:3d74c1176d67 draft
Uploaded minor fix
| author | peterjc |
|---|---|
| date | Wed, 03 Apr 2013 10:47:50 -0400 |
| parents | 391a142c1e60 |
| children | 20139cb4c844 |
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| 10:7c1eda453701 | 11:3d74c1176d67 |
|---|---|
| 154 del results | 154 del results |
| 155 del jobs | 155 del jobs |
| 156 | 156 |
| 157 out_handle = open(tabular_file, "w") | 157 out_handle = open(tabular_file, "w") |
| 158 out_handle.write("#%s\n" % "\t".join(header)) | 158 out_handle.write("#%s\n" % "\t".join(header)) |
| 159 count = 0 | |
| 159 for temp in temp_files: | 160 for temp in temp_files: |
| 160 data_handle = open(temp) | 161 data_handle = open(temp) |
| 161 count = clean_tabular(data_handle, out_handle) | 162 count += clean_tabular(data_handle, out_handle) |
| 162 data_handle.close() | 163 data_handle.close() |
| 163 if not count: | 164 if not count: |
| 164 clean_up(fasta_files + temp_files) | 165 clean_up(fasta_files + temp_files) |
| 165 stop_err("No output from psortb") | 166 stop_err("No output from psortb") |
| 166 out_handle.close() | 167 out_handle.close() |