Mercurial > repos > peterjc > ncbi_blast_plus

<?xml version="1.0"?>
<tool_dependency>
    <package name="blast+" version="2.2.26+">
        <install version="1.0">
            <actions>
                <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-x64-linux.tar.gz</action>
                <action type="move_directory_files">
                    <source_directory>ncbi-blast-2.2.26+/bin</source_directory>
                    <destination_directory>$INSTALL_DIR</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
Downloads the precompiled 64bit Linux BLAST+ binaries from the NCBI,
which is faster than performing a local compliation, avoids any issues
with build dependencies, and is more reproducible between installations
as there is no variability from the compiler or library versions.

If/when the Galaxy installation framework allows for 32bit versus 64bit,
or different operating system, the NCBI binaries cover the main cases.

For more details, see:
http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
        </readme>
    </package>
</tool_dependency>
author	peterjc
date	Mon, 29 Apr 2013 10:18:29 -0400
parents	b04f55ab182c
children	cc1416954958