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view tools/ncbi_blast_plus/tool_dependencies.xml @ 19:c1a6e5aefee0 draft

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Uploaded v0.0.20 preview 10. Auto install of 64 bit Linux binaries was working, but reverting to local compile for cross-platform support.
author peterjc
date Wed, 29 May 2013 10:03:48 -0400
parents cc1416954958
children
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<?xml version="1.0"?>
<tool_dependency>
    <package name="blast+" version="2.2.26+">
        <install version="1.0">
            <actions>
                <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action>
                <action type="shell_command">cd c++ &amp;&amp; ./configure --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
Downloads and compiles BLAST+ from the NCBI, which assumes you have
all the required build dependencies installed. See:
http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
        </readme>
    </package>
</tool_dependency>