Mercurial > repos > peterjc > ncbi_blast_plus
view tools/ncbi_blast_plus/ncbi_blastdbcmd_info.xml @ 32:b2795652d2b4 draft
Uploaded v0.0.22a, more macros, $GALAXY_SLOTS, more descriptive output names, test makeblastdb
author | peterjc |
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date | Mon, 25 Nov 2013 10:58:46 -0500 |
parents | 5ec998a3530c |
children | 2f7fac29bb3c |
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<tool id="ncbi_blastdbcmd_info" name="NCBI BLAST+ database info" version="0.0.22"> <description>Show BLAST database information from blastdbcmd</description> <macros> <token name="@BINARY@">blastdbcmd</token> <import>ncbi_macros.xml</import> </macros> <expand macro="requirements" /> <command> blastdbcmd -dbtype $db_opts.db_type -db "${db_opts.database.fields.path}" -info -out "$info" </command> <expand macro="stdio" /> <inputs> <expand macro="input_conditional_choose_db_type" /> </inputs> <outputs> <data name="info" format="txt" label="${db_opts.database.fields.name} info" /> </outputs> <help> **What it does** Calls the NCBI BLAST+ blastdbcmd command line tool with the -info switch to give summary information about a BLAST database, such as the size (number of sequences and total length) and date. ------- **References** If you use this Galaxy tool in work leading to a scientific publication please cite the following papers: @REFERENCES@ </help> </tool>