Mercurial > repos > blankenberg > data_manager_bwa_index_builder
changeset 2:fe6508204acc default tip
Add abspath value translation to data_manager_conf.xml.
| author | Daniel Blankenberg <dan@bx.psu.edu> |
|---|---|
| date | Tue, 04 Jun 2013 14:57:17 -0400 |
| parents | 11e84434ae70 |
| children | |
| files | data_manager_conf.xml |
| diffstat | 1 files changed, 2 insertions(+), 0 deletions(-) [+] |
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--- a/data_manager_conf.xml Tue May 21 14:26:28 2013 -0400 +++ b/data_manager_conf.xml Tue Jun 04 14:57:17 2013 -0400 @@ -13,6 +13,7 @@ <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bwa_index/${value}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bwa_index/${value}/${path}</value_translation> + <value_translation type="function">abspath</value_translation> </column> </output> </data_table> @@ -30,6 +31,7 @@ <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bwa_index/${value}/color</target> <!-- confirm this as preferred location --> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bwa_index/${value}/color/${path}</value_translation> + <value_translation type="function">abspath</value_translation> </column> </output> </data_table>