Mercurial > repos > bgruening > openms
view PTPredict.xml @ 4:6ead64a594bd draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/openms commit 7a5239910fda9ed90cca286a38855703b40b1b56-dirty
author | bgruening |
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date | Wed, 27 Jan 2016 10:06:49 -0500 |
parents | 3d84209d3178 |
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<?xml version="1.0" encoding="UTF-8"?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Peptide property prediction]--> <tool id="PTPredict" name="PTPredict" version="2.0.0"> <description>predicts the likelihood of peptides to be proteotypic via svm_model which is trained by PTModel</description> <macros> <token name="@EXECUTABLE@">PTPredict</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command>PTPredict #if $param_in: -in $param_in #end if #if $param_out: -out $param_out #end if #if $param_svm_model: -svm_model $param_svm_model #end if #if $param_max_number_of_peptides: -max_number_of_peptides $param_max_number_of_peptides #end if -threads \${GALAXY_SLOTS:-24} #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force #end if #end if </command> <inputs> <param format="xml" help="(-in) " label="input file" name="param_in" optional="False" type="data"/> <param format="txt" help="(-svm_model) " label="svm model in libsvm format (can be produced by PTModel)" name="param_svm_model" optional="False" type="data"/> <param help="(-max_number_of_peptides) <br>" label="the maximum number of peptides considered at once (bigger number will lead to faster results but needs more memory)" name="param_max_number_of_peptides" type="integer" value="100000"/> <expand macro="advanced_options"> <param checked="false" falsevalue="" help="(-force) " label="Overwrite tool specific checks" name="param_force" optional="True" truevalue="-force" type="boolean"/> </expand> </inputs> <outputs> <data format="xml" name="param_out"/> </outputs> <help>predicts the likelihood of peptides to be proteotypic via svm_model which is trained by PTModel For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_PTPredict.html</help> </tool>