view LabeledEval.xml @ 4:6ead64a594bd draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/openms commit 7a5239910fda9ed90cca286a38855703b40b1b56-dirty
author bgruening
date Wed, 27 Jan 2016 10:06:49 -0500
parents 3d84209d3178
children
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<?xml version="1.0" encoding="UTF-8"?>
  <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
  <!--Proposed Tool Section: [Utilities]-->
  <tool id="LabeledEval" name="LabeledEval" version="2.0.0">
    <description> Evaluation tool for isotope-labeled quantitation experiments.</description>
    <macros>
      <token name="@EXECUTABLE@">LabeledEval</token>
      <import>macros.xml</import>
    </macros>
    <expand macro="references"/>
    <expand macro="stdio"/>
    <expand macro="requirements"/>
    <command>LabeledEval

#if $param_in:
  -in $param_in
#end if
#if $param_truth:
  -truth $param_truth
#end if
#if $param_rt_tol:
  -rt_tol $param_rt_tol
#end if
#if $param_mz_tol:
  -mz_tol $param_mz_tol
#end if
-threads \${GALAXY_SLOTS:-24}
#if $adv_opts.adv_opts_selector=='advanced':
    #if $adv_opts.param_force:
  -force
#end if
#end if
&gt; $param_stdout
</command>
    <inputs>
      <param format="xml" help="(-in) " label="Feature result file" name="param_in" optional="False" type="data"/>
      <param format="consensusxml" help="(-truth) " label="Expected result file" name="param_truth" optional="False" type="data"/>
      <param help="(-rt_tol) " label="Maximum allowed retention time deviation" name="param_rt_tol" type="float" value="20.0"/>
      <param help="(-mz_tol) " label="Maximum allowed m/z deviation (divided by charge)" name="param_mz_tol" type="float" value="0.25"/>
      <expand macro="advanced_options">
        <param checked="false" falsevalue="" help="(-force) " label="Overwrite tool specific checks" name="param_force" optional="True" truevalue="-force" type="boolean"/>
      </expand>
    </inputs>
    <outputs>
      <data format="text" label="Output from stdout" name="param_stdout"/>
    </outputs>
    <help> Evaluation tool for isotope-labeled quantitation experiments.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_LabeledEval.html</help>
  </tool>