Mercurial > repos > bgruening > openms
view LabeledEval.xml @ 4:6ead64a594bd draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/openms commit 7a5239910fda9ed90cca286a38855703b40b1b56-dirty
author | bgruening |
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date | Wed, 27 Jan 2016 10:06:49 -0500 |
parents | 3d84209d3178 |
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<?xml version="1.0" encoding="UTF-8"?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Utilities]--> <tool id="LabeledEval" name="LabeledEval" version="2.0.0"> <description> Evaluation tool for isotope-labeled quantitation experiments.</description> <macros> <token name="@EXECUTABLE@">LabeledEval</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command>LabeledEval #if $param_in: -in $param_in #end if #if $param_truth: -truth $param_truth #end if #if $param_rt_tol: -rt_tol $param_rt_tol #end if #if $param_mz_tol: -mz_tol $param_mz_tol #end if -threads \${GALAXY_SLOTS:-24} #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force #end if #end if > $param_stdout </command> <inputs> <param format="xml" help="(-in) " label="Feature result file" name="param_in" optional="False" type="data"/> <param format="consensusxml" help="(-truth) " label="Expected result file" name="param_truth" optional="False" type="data"/> <param help="(-rt_tol) " label="Maximum allowed retention time deviation" name="param_rt_tol" type="float" value="20.0"/> <param help="(-mz_tol) " label="Maximum allowed m/z deviation (divided by charge)" name="param_mz_tol" type="float" value="0.25"/> <expand macro="advanced_options"> <param checked="false" falsevalue="" help="(-force) " label="Overwrite tool specific checks" name="param_force" optional="True" truevalue="-force" type="boolean"/> </expand> </inputs> <outputs> <data format="text" label="Output from stdout" name="param_stdout"/> </outputs> <help> Evaluation tool for isotope-labeled quantitation experiments. For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_LabeledEval.html</help> </tool>