Mercurial > repos > bgruening > openms
view IDExtractor.xml @ 4:6ead64a594bd draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/openms commit 7a5239910fda9ed90cca286a38855703b40b1b56-dirty
author | bgruening |
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date | Wed, 27 Jan 2016 10:06:49 -0500 |
parents | 3d84209d3178 |
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<?xml version="1.0" encoding="UTF-8"?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Utilities]--> <tool id="IDExtractor" name="IDExtractor" version="2.0.0"> <description>Extracts 'n' peptides randomly or best 'n' from idXML files.</description> <macros> <token name="@EXECUTABLE@">IDExtractor</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command>IDExtractor #if $param_in: -in $param_in #end if #if $param_out: -out $param_out #end if #if $param_number_of_peptides: -number_of_peptides $param_number_of_peptides #end if #if $param_number_of_rand_invokations: -number_of_rand_invokations $param_number_of_rand_invokations #end if #if $param_best_hits: -best_hits #end if -threads \${GALAXY_SLOTS:-24} #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force #end if #end if </command> <inputs> <param format="xml" help="(-in) " label="input file" name="param_in" optional="False" type="data"/> <param help="(-number_of_peptides) " label="Number of randomly chosen peptides" min="1" name="param_number_of_peptides" optional="True" type="integer" value="10"/> <param help="(-number_of_rand_invokations) " label="Number of rand invocations before random draw" min="0" name="param_number_of_rand_invokations" optional="True" type="integer" value="0"/> <param checked="false" falsevalue="" help="(-best_hits) " label="If this flag is set the best n peptides are chosen" name="param_best_hits" optional="True" truevalue="-best_hits" type="boolean"/> <expand macro="advanced_options"> <param checked="false" falsevalue="" help="(-force) " label="Overwrite tool specific checks" name="param_force" optional="True" truevalue="-force" type="boolean"/> </expand> </inputs> <outputs> <data format="xml" name="param_out"/> </outputs> <help>Extracts 'n' peptides randomly or best 'n' from idXML files. For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_IDExtractor.html</help> </tool>