view FileInfo.xml @ 4:6ead64a594bd draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/openms commit 7a5239910fda9ed90cca286a38855703b40b1b56-dirty

<?xml version="1.0" encoding="UTF-8"?>
  <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
  <!--Proposed Tool Section: [File Handling]-->
  <tool id="FileInfo" name="FileInfo" version="2.0.0">
    <description>Shows basic information about the file, such as data ranges and file type.</description>
    <macros>
      <token name="@EXECUTABLE@">FileInfo</token>
      <import>macros.xml</import>
    </macros>
    <expand macro="references"/>
    <expand macro="stdio"/>
    <expand macro="requirements"/>
    <command>FileInfo

#if $param_in:
  -in $param_in
#end if
#if $param_out:
  -out $param_out
#end if
#if $param_out_tsv:
  -out_tsv $param_out_tsv
#end if
#if $param_m:
  -m
#end if
#if $param_p:
  -p
#end if
#if $param_s:
  -s
#end if
#if $param_d:
  -d
#end if
#if $param_c:
  -c
#end if
#if $param_v:
  -v
#end if
#if $param_i:
  -i
#end if
-threads \${GALAXY_SLOTS:-24}
#if $adv_opts.adv_opts_selector=='advanced':
    #if $adv_opts.param_force:
  -force
#end if
#end if
</command>
    <inputs>
      <param format="xml,mzml,mzxml,consensusxml,txt,pepxml" help="(-in) " label="input file" name="param_in" optional="False" type="data"/>
      <param checked="false" falsevalue="" help="(-m) " label="Show meta information about the whole experiment" name="param_m" optional="True" truevalue="-m" type="boolean"/>
      <param checked="false" falsevalue="" help="(-p) " label="Shows data processing information" name="param_p" optional="True" truevalue="-p" type="boolean"/>
      <param checked="false" falsevalue="" help="(-s) " label="Computes a five-number statistics of intensities, qualities, and widths" name="param_s" optional="True" truevalue="-s" type="boolean"/>
      <param checked="false" falsevalue="" help="(-d) " label="Show detailed listing of all spectra and chromatograms (peak files only)" name="param_d" optional="True" truevalue="-d" type="boolean"/>
      <param checked="false" falsevalue="" help="(-c) " label="Check for corrupt data in the file (peak files only)" name="param_c" optional="True" truevalue="-c" type="boolean"/>
      <param checked="false" falsevalue="" help="(-v) " label="Validate the file only (for mzML, mzData, mzXML, featureXML, idXML, consensusXML, pepXML)" name="param_v" optional="True" truevalue="-v" type="boolean"/>
      <param checked="false" falsevalue="" help="(-i) " label="Check whether a given mzML file contains valid indices (conforming to the indexedmzML standard)" name="param_i" optional="True" truevalue="-i" type="boolean"/>
      <expand macro="advanced_options">
        <param checked="false" falsevalue="" help="(-force) " label="Overwrite tool specific checks" name="param_force" optional="True" truevalue="-force" type="boolean"/>
      </expand>
    </inputs>
    <outputs>
      <data format="txt" name="param_out"/>
      <data format="tabular" name="param_out_tsv"/>
    </outputs>
    <help>Shows basic information about the file, such as data ranges and file type.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FileInfo.html</help>
  </tool>