view SpectraFilterWindowMower.xml @ 0:3d84209d3178 draft

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<?xml version='1.0' encoding='UTF-8'?>
<tool id="SpectraFilterWindowMower" name="SpectraFilterWindowMower" version="1.12.0">
  <description>Applies thresholdfilter to peak spectra.</description>
  <macros>
    <token name="@EXECUTABLE@">SpectraFilterWindowMower</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>SpectraFilterWindowMower

-in ${param_in}
-out ${param_out}
-threads \${GALAXY_SLOTS:-24} 
-algorithm:windowsize ${param_windowsize}
-algorithm:peakcount ${param_peakcount}
-algorithm:movetype ${param_movetype}
</command>
  <inputs>
    <param name="param_in" type="data" format="mzML" optional="False" label="input file " help="(-in)"/>
    <param name="param_windowsize" type="float" value="50.0" label="The size of the sliding window along the m/z axis." help="(-windowsize)"/>
    <param name="param_peakcount" type="integer" value="2" label="The number of peaks that should be kept." help="(-peakcount)"/>
    <param name="param_movetype" type="select" optional="True" value="slide" label="Whether sliding window (one peak steps) or jumping window (window size steps) should be used." help="(-movetype)">
      <option value="slide">slide</option>
      <option value="jump">jump</option>
    </param>
  </inputs>
  <outputs>
    <data name="param_out" label="output file " format="mzML"/>
  </outputs>
  <help>**What it does**

Applies thresholdfilter to peak spectra.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterWindowMower.html

@REFERENCES@
</help>
</tool>