view SequenceCoverageCalculator.xml @ 0:3d84209d3178 draft

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<?xml version='1.0' encoding='UTF-8'?>
<tool id="SequenceCoverageCalculator" name="SequenceCoverageCalculator" version="1.12.0">
  <description>Prints information about idXML files.</description>
  <macros>
    <token name="@EXECUTABLE@">SequenceCoverageCalculator</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>SequenceCoverageCalculator

-in_database ${param_in_database}
-in_peptides ${param_in_peptides}
-out ${param_out}
-threads \${GALAXY_SLOTS:-24} 
</command>
  <inputs>
    <param name="param_in_database" type="data" format="fasta" optional="False" label="input file containing the database in FASTA format" help="(-in_database)"/>
    <param name="param_in_peptides" type="data" format="idXML" optional="False" label="input file containing the identified peptides" help="(-in_peptides)"/>
  </inputs>
  <outputs>
    <data name="param_out" label="Optional text output file. If left out, the output is written to the command line." format="txt"/>
  </outputs>
  <help>**What it does**

Prints information about idXML files.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SequenceCoverageCalculator.html

@REFERENCES@
</help>
</tool>