Mercurial > repos > bgruening > openms
view OpenSwathRewriteToFeatureXML.xml @ 0:3d84209d3178 draft
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author | bgruening |
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date | Fri, 10 Oct 2014 18:20:03 -0400 |
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children | 6ead64a594bd |
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<?xml version='1.0' encoding='UTF-8'?> <tool id="OpenSwathRewriteToFeatureXML" name="OpenSwathRewriteToFeatureXML" version="1.12.0"> <description>Combines featureXML and mProphet tsv to FDR filtered featureXML.</description> <macros> <token name="@EXECUTABLE@">OpenSwathRewriteToFeatureXML</token> <import>macros.xml</import> </macros> <expand macro="stdio"/> <expand macro="requirements"/> <command>OpenSwathRewriteToFeatureXML -csv ${param_csv} -featureXML ${param_featureXML} -out ${param_out} -FDR_cutoff ${param_FDR_cutoff} -threads \${GALAXY_SLOTS:-24} </command> <inputs> <param name="param_csv" type="data" format="tabular" optional="True" label="mProphet tsv output file: "all_peakgroups.xls"" help="(-csv)"/> <param name="param_featureXML" type="data" format="featureXML" optional="False" label="input featureXML file" help="(-featureXML)"/> <param name="param_FDR_cutoff" type="float" value="-1.0" label="FDR cutoff (e.g. to remove all features with a an m_score above 0.05 use 0.05 here)" help="(-FDR_cutoff)"/> </inputs> <outputs> <data name="param_out" label="output featureXML file" format="featureXML"/> </outputs> <help>**What it does** Combines featureXML and mProphet tsv to FDR filtered featureXML. For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_OpenSwathRewriteToFeatureXML.html @REFERENCES@ </help> </tool>