view HighResPrecursorMassCorrector.xml @ 0:3d84209d3178 draft

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<?xml version='1.0' encoding='UTF-8'?>
<tool id="HighResPrecursorMassCorrector" name="HighResPrecursorMassCorrector" version="1.12.0">
  <description>Corrects the precursor mz determined by the instrument software.</description>
  <macros>
    <token name="@EXECUTABLE@">HighResPrecursorMassCorrector</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>HighResPrecursorMassCorrector

-in ${param_in}
-out ${param_out}
-out_csv ${param_out_csv}
-threads \${GALAXY_SLOTS:-24} 
</command>
  <inputs>
    <param name="param_in" type="data" format="mzML" optional="False" label="input file (centroided data)" help="(-in)"/>
  </inputs>
  <outputs>
    <data name="param_out" label="output file" format="mzML"/>
    <data name="param_out_csv" label="Optional csv output file containing columns: precursor rt, uncorrected mz, corrected mz, delta mz#br#" format="tabular"/>
  </outputs>
  <help>**What it does**

Corrects the precursor mz determined by the instrument software.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_HighResPrecursorMassCorrector.html

@REFERENCES@
</help>
</tool>