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<?xml version='1.0' encoding='UTF-8'?>
<tool id="DTAExtractor" name="DTAExtractor" version="1.12.0">
  <description>Extracts spectra of an MS run file to several files in DTA format.</description>
  <macros>
    <token name="@EXECUTABLE@">DTAExtractor</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>DTAExtractor

-in ${param_in}
-out ${param_out}
-mz ${param_mz}
-rt ${param_rt}
-level ${param_level}
-threads \${GALAXY_SLOTS:-24} 
</command>
  <inputs>
    <param name="param_in" type="data" format="mzML" optional="False" label="input file " help="(-in)"/>
    <param name="param_out" type="text" size="20" label="base name of DTA output files (RT, m/z and extension are appended)" help="(-out)"/>
    <param name="param_mz" type="text" size="20" value=":" label="m/z range of precursor peaks to extract.#br#This option is ignored for MS level 1" help="(-mz)"/>
    <param name="param_rt" type="text" size="20" value=":" label="retention time range of spectra to extract" help="(-rt)"/>
    <param name="param_level" type="text" size="20" value="1,2,3" label="MS levels to extract" help="(-level)"/>
  </inputs>
  <outputs/>
  <help>**What it does**

Extracts spectra of an MS run file to several files in DTA format.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_DTAExtractor.html

@REFERENCES@
</help>
</tool>